Labs

Archetti Lab

Evolutionary Game Theory, Applied Game Theory, Evolutionary Genetics, Dynamics of Cancer

Bankevich Lab

sequencing data analysis and genome assembly

Cheng Lab

Convergence Science approaches to phenomics, cancer genetics, web-based resources, image Informatics, systems genetics, genomics, and pigmentation genetics

Cremona Lab

Statistical techniques for the analysis of large, high-dimensional and complex data.

Davenport Lab

Understanding the complex relationship humans have with our microbiomes, using high-throughput sequencing technologies and novel computational and statistical techniques.

Eckert Lab

Molecular mechanisms of mutagenesis in human cells as related to cancer

Fernández-Rhodes Lab

Genetic, Epigenetic, and Social Epidemiology

Georgakopoulos-Soares Lab

Using bioinformatic and genomics approaches across basic science research problems and in translational medicine.

Girirajan Lab

Genetics of neurodevelopmental disorders

Gonzalez Lab

Neuropsychiatric genetics in diverse populations

Hicks Lab

Assistant Prof in the Dept of Pediatrics

Huber Lab

Ancient DNA, Bioinformatics, Conservation Genetics, Evolutionary Biology, Population Genetics

Krasilnikova Lab

Mechanisms of trinucleotide repeats diseases

Li Lab

Developing statistical methods for uncovering complicated patterns in large and complex data

Liu Lab

Statistical Genetics; Complex Trait Genetics; Functional Genomics

Medvedev Lab

Computational Approaches for High-Throughput Sequencing Data

Paul Lab

Newborn health outcomes, childhood obesity, breastfeeding, pediatric therapeutics, asthma

Reimherr Lab

Functional Data Analysis; Longitudinal Data Analysis; Statistical Genetics; High Dimensional Regression and Screening; Functional Time Series and Spatio-Temporal Processes; Change-Point Analysis

Safonova Lab

Development of computational tools for comparative and personalized immunogenomics and studies adaptive immune systems and responses

Silverman Lab

Uncertainty quantification in the setting of partial identifiability with a particular application to the analysis of multivariate sequence count data, multivariate time-series analysis

Slavkovic Lab

Statistical Data Privacy, Differential Privacy, Algebraic Statistics, Discrete Distributions, Application of Statistics to Information and Social Sciences

Spratt Lab

The Enzymology of DNA Repair and Mutagenesis; Mechanisms of fidelity and mutagenesis of DNA polymerases

Szpiech Lab

Population genetics and evolutionary genomics

Marta Tomaszkiewicz

Genomics, Ampliconic genes, Human Genetics, Chromosome biology, and Y Chromosome Evolution.

Veturi Lab

integration of high-dimensional data with electronic health records to dissect shared genetics among complex human traits/diseases and to understand sex and ethnic differences in cognitive decline.

Wagner Lab

international human right to science, including human-centered design and matters of nondiscrimination, privacy, and equity with genetic/omic and mobile/digital health technologies.

Collaborative Publications

More Publications

D McGuire, H Markus, L Yang, J Xu, A Montgomery, A Berg, Q Li, L Carrel, DJ Liu, B Jiang. Dissecting heritability, environmental risk, and air pollution causal effects using > 50 million individuals in MarketScan. Nat Commun, 2024.

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KD Makova, BD Pickett, RS Harris, GA Hartley, M Cechova, K Pal, S Nurk, D Yoo, Q Li, P Hebbar, BC McGrath, F Antonacci, M Aubel, A Biddanda, M Borchers, E Bomberg, GG Bouffard, SY Brooks, L Carbone, L Carrel, A Carroll, PC Chang, CS Chin, DE Cook, SJC Craig, L de Gennaro, M Diekhans, A Dutra, GH Garcia, PGS Grady, RE Green, D Haddad, P Hallast, WT Harvey, G Hickey, DA Hillis, SJ Hoyt, H Jeong, K Kamali, SLK Pond, TM LaPolice, C Lee, AP Lewis, YE Loh, P Masterson, RC McCoy, P Medvedev, KH Miga, KM Munson, E Pak, B Paten, BJ Pinto, T Potapova, A Rhie, JL Rocha, F Ryabov, OA Ryder, S Sacco, K Shafin, VA Shepelev, V Slon, SJ Solar, JM Storer, PH Sudmant, Sweetalana, A Sweeten, MG Tassia, F Thibaud-Nissen, M Ventura, MA Wilson, AC Young, H Zeng, X Zhang, ZA Szpiech, CD Huber, JL Gerton, SV Yi, MC Schatz, IA Alexandrov, S Koren, RJ O’Neill, E Eichler, AM Phillippy. The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes. Nature, 2024.

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L Wang, C Khunsriraksakul, H Markus, D Chen, F Zhang, F Chen, X Zhan, L Carrel, DJ Liu, B Jiang. Integrating single cell expression quantitative trait loci summary statistics to understand complex trait risk genes. Nat Commun, 2024.

DOI

D Lariviere, SJC Craig, IM Paul, EE Hohman, JS Savage, RO Wright, F Chiaromonte, KD Makova, ML Reimherr. Methylation profiles at birth linked to early childhood obesity. J Dev Orig Health Dis, 2024.

DOI

A Lahnsteiner, SJC Craig, K Kamali, B Weissensteiner, B McGrath, A Risch, KD Makova. In vivo detection of DNA secondary structures using Permanganate/S1 Footprinting with Direct Adapter Ligation and Sequencing (PDAL-Seq). Methods in Enzymology, 2024.

DOI

M Tomaszkiewicz, K Sahlin, P Medvedev, KD Makova. Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes. Genome Biol Evol, 2023.

DOI

A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, S Koren, M Rautiainen, IA Alexandrov, J Allen, M Asri, AV Bzikadze, NC Chen, CS Chin, M Diekhans, P Flicek, G Formenti, A Fungtammasan, CG Giron, E Garrison, A Gershman, JL Gerton, PGS Grady, A Guarracino, L Haggerty, R Halabian, NF Hansen, R Harris, GA Hartley, WT Harvey, M Haukness, J Heinz, T Hourlier, RM Hubley, SE Hunt, S Hwang, M Jain, RK Kesharwani , AP Lewis, H Li, GA Logsdon, JK Lucas, W Makalowski, C Markovic, FJ Martin, AMM Cartney, RC McCoy, J McDaniel, BM McNulty, P Medvedev, A Mikheenko, KM Munson , TD Murphy, H Olsen, ND Olson, LF Paulin, D Porubsky, T Potapova, F Ryabov, SL Salzberg, MEG Sauria, FJ Sedlazeck, K Shafin, VA Shepelev, A Shumate, JM Storer, L Surapaneni, AMT Oill , F Thibaud-Nissen, W Timp, M Tomaszkiewicz, MR Vollger, BP Walenz, AC Watwood, MH Weissensteiner, AM Wenger, MA Wilson, S Zarate, Y Zhu, JM Zook, EE Eichler, RJ O’Neill, MC Schatz, KH Miga, KD Makova, AM Phillippy. The complete sequence of a human Y chromosome. Nature, 2023.

DOI

KC Ang, VA Canfield, TC Foster, TD Harbaugh, KA Early, RL Harter, KP Reid, SL Leong, Y Kawasawa, DJ Liu, JW Hawley, KC Cheng. Native American genetic ancestry and pigmentation allele contributions to skin color in a Caribbean population. elife, 2023.

DOI

MH Weissensteiner, MA Cremona, WM Guiblet, N Stoler, RS Harris, M Cechova, KA Eckert, F Chiaromonte, YF Huang, KD Makova. Accurate sequencing of DNA motifs able to form alternative (non-B) structures. Genome Res, 2023.

DOI

M Escalona, J VanCampen, NW Maurer, M Haukness, M Okhovat, RS Harris, A Watwood, GA Hartley, RJ O’Neill, P Medvedev, KD Makova, C Vollmers, L Carbone, RE Green. Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch). J Hered, 2023.

DOI

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