Labs

Archetti Lab

Evolutionary Game Theory, Applied Game Theory, Evolutionary Genetics, Dynamics of Cancer

Cheng Lab

Convergence Science approaches to phenomics, cancer genetics, web-based resources, image Informatics, systems genetics, genomics, and pigmentation genetics

Cremona Lab

Statistical techniques for the analysis of large, high-dimensional and complex data.

Davenport Lab

Understanding the complex relationship humans have with our microbiomes, using high-throughput sequencing technologies and novel computational and statistical techniques.

Eckert Lab

Molecular mechanisms of mutagenesis in human cells as related to cancer

Fernández-Rhodes Lab

Genetic, Epigenetic, and Social Epidemiology

Georgakopoulos-Soares Lab

Using bioinformatic and genomics approaches across basic science research problems and in translational medicine.

Girirajan Lab

Genetics of neurodevelopmental disorders

Gonzalez Lab

Neuropsychiatric genetics in diverse populations

Hicks Lab

Assistant Prof in the Dept of Pediatrics

Krasilnikova Lab

Mechanisms of trinucleotide repeats diseases

Li Lab

Developing statistical methods for uncovering complicated patterns in large and complex data

Liu Lab

Statistical Genetics; Complex Trait Genetics; Functional Genomics

Medvedev Lab

Computational Approaches for High-Throughput Sequencing Data

Paul Lab

Newborn health outcomes, childhood obesity, breastfeeding, pediatric therapeutics, asthma

Reimherr Lab

Functional Data Analysis; Longitudinal Data Analysis; Statistical Genetics; High Dimensional Regression and Screening; Functional Time Series and Spatio-Temporal Processes; Change-Point Analysis

Slavkovic Lab

Statistical Data Privacy, Differential Privacy, Algebraic Statistics, Discrete Distributions, Application of Statistics to Information and Social Sciences

Spratt Lab

The Enzymology of DNA Repair and Mutagenesis; Mechanisms of fidelity and mutagenesis of DNA polymerases

Szpiech Lab

Population genetics and evolutionary genomics

Marta Tomaszkiewicz

DOI

D Lariviere, SJC Craig, IM Paul, EE Hohman, JS Savage, RO Wright, F Chiaromonte, KD Makova, ML Reimherr. Methylation profiles at birth linked to early childhood obesity. medRxiv, 2024.

DOI

KD Makova, BD Pickett, RS Harris, GA Hartley, M Cechova, K Pal, S Nurk, D Yoo, Q Li, P Hebbar, BC McGrath, F Antonacci, M Aubel, A Biddanda, M Borchers, E Bomberg, GG Bouffard, SY Brooks, L Carbone, L Carrel, A Carroll, PC Chang, CS Chin, DE Cook, SJC Craig, L de Gennaro, M Diekhans, A Dutra, GH Garcia, PGS Grady, RE Green, D Haddad, P Hallast, WT Harvey, G Hickey, DA Hillis, SJ Hoyt, H Jeong, K Kamali, SLK Pond, TM LaPolice, C Lee, AP Lewis, YE Loh, P Masterson, RC McCoy, P Medvedev, KH Miga, KM Munson, E Pak, B Paten, BJ Pinto, T Potapova, A Rhie, JL Rocha, F Ryabov, OA Ryder, S Sacco, K Shafin, VA Shepelev, V Slon, SJ Solar, JM Storer, PH Sudmant, Sweetalana, A Sweeten, MG Tassia, F Thibaud-Nissen, M Ventura, MA Wilson, AC Young, H Zeng, X Zhang, ZA Szpiech, CD Huber, JL Gerton, SV Yi, MC Schatz, IA Alexandrov, S Koren, RJ O’Neill, E Eichler, AM Phillippy. The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes. bioRxiv, 2023.

DOI

M Tomaszkiewicz, K Sahlin, P Medvedev, KD Makova. Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes. Genome Biol Evol, 2023.

DOI

A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, S Koren, M Rautiainen, IA Alexandrov, J Allen, M Asri, AV Bzikadze, NC Chen, CS Chin, M Diekhans, P Flicek, G Formenti, A Fungtammasan, CG Giron, E Garrison, A Gershman, JL Gerton, PGS Grady, A Guarracino, L Haggerty, R Halabian, NF Hansen, R Harris, GA Hartley, WT Harvey, M Haukness, J Heinz, T Hourlier, RM Hubley, SE Hunt, S Hwang, M Jain, RK Kesharwani , AP Lewis, H Li, GA Logsdon, JK Lucas, W Makalowski, C Markovic, FJ Martin, AMM Cartney, RC McCoy, J McDaniel, BM McNulty, P Medvedev, A Mikheenko, KM Munson , TD Murphy, H Olsen, ND Olson, LF Paulin, D Porubsky, T Potapova, F Ryabov, SL Salzberg, MEG Sauria, FJ Sedlazeck, K Shafin, VA Shepelev, A Shumate, JM Storer, L Surapaneni, AMT Oill , F Thibaud-Nissen, W Timp, M Tomaszkiewicz, MR Vollger, BP Walenz, AC Watwood, MH Weissensteiner, AM Wenger, MA Wilson, S Zarate, Y Zhu, JM Zook, EE Eichler, RJ O’Neill, MC Schatz, KH Miga, KD Makova, AM Phillippy. The complete sequence of a human Y chromosome. Nature, 2023.

DOI

MH Weissensteiner, MA Cremona, WM Guiblet, N Stoler, RS Harris, M Cechova, KA Eckert, F Chiaromonte, YF Huang, KD Makova. Accurate sequencing of DNA motifs able to form alternative (non-B) structures. Genome Res, 2023.

DOI

M Escalona, J VanCampen, NW Maurer, M Haukness, M Okhovat, RS Harris, A Watwood, GA Hartley, RJ O’Neill, P Medvedev, KD Makova, C Vollmers, L Carbone, RE Green. Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch). J Hered, 2023.

DOI

C Khunsriraksakul, Q Li, H Markus, MT Patrick, R Sauteraud, D McGuire, X Wang, C Wang, L Wang, S Chen, G Shenoy, B Li, X Zhong, NJ Olsen, L Carrel, LC Tsoi, B Jiang, DJ Liu. Multi-ancestry and multi-trait genome-wide association meta-analyses inform clinical risk prediction for systemic lupus erythematosus. Nat Commun, 2023.

DOI

SJC Craig, AM Kenney, J Lin, IM Paul, LL Birch, JS Savage, ME Marini, F Chiaromonte, ML Reimherr, KD Makova. Constructing a polygenic risk score for childhood obesity using functional data analysis. Econom Stat, 2023.

DOI

ME Stein, SE Hile, MH Weissensteiner, M Lee, S Zhang, E Kejnovský, I Kejnovská, KD Makova, KA Eckert. Variation in G-quadruplex sequence and topology differentially impacts human DNA polymerase fidelity. DNA Repair, 2022.

DOI

Center for Medical Genomics

Labs

Archetti Lab

Carrel Lab

Cheng Lab

Chiaromonte Lab

Sarah Craig

Cremona Lab

Davenport Lab

Dovat Lab

Eckert Lab

Fernández-Rhodes Lab

Georgakopoulos-Soares Lab

Girirajan Lab

Gonzalez Lab

Hicks Lab

Janicki Lab

Krasilnikova Lab

Li Lab

Liu Lab

Makova Lab

Medvedev Lab

Paul Lab

Reimherr Lab

Slavkovic Lab

Spratt Lab

Szpiech Lab

Marta Tomaszkiewicz

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